FastQCFastQC Report
Wed 8 May 2024
EGAF00007962485

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962485
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences565541
Total Bases17.5 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTGAACGCCAGAAACGTGTTGACGATGAGG29640.5240999326308792No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA27190.48077858192421064No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT16910.29900573079582204No Hit
TTCACTCCGATCAAGAAACCGGGTACCTCCG15960.2822076560320118No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG15870.28061625947544033No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG14490.2562148456080107No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG13310.23534986853296225No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA12180.21536900065600903No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA11540.2040524029203895No Hit
CCAGCGGCTGAAGCTCACGCCGCGCGTTCCG9730.17204764994934055No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9650.1706330752323881No Hit
GTTGCGACCCCACACGCCTCCGCGCGCGCTC9620.17010260971353094No Hit
GCTTGGGCGCTGAAAAACCCGCACCTGGCAT9560.16904167867581663No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9310.16462113268534023No Hit
CCGAAGAAAAACCGTAAACCGAAGCCACCGA8510.15047538551581582No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT8050.14234158089333931No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)