FastQCFastQC Report
Wed 8 May 2024
EGAF00007962486

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962486
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences549967
Total Bases24.1 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG27130.493302325412252No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG14340.26074291730231086No Hit
CAGGCTAAACGCTGCGTGACGCTGTTGCTGCTGCGGAATGTTCA14170.2576518227457284No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG13880.25237877909038176No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG13820.25128780454099975No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT12770.2321957499268138No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC12020.2185585680595381No Hit
CCAAACTTCGTCGGCCGCATCACGAGAAGCGGTCTGAGTGACGG9020.1640098405904354No Hit
AGTCACGTTACGAGAAGAGGTGGTTTTGCTGGAGGCCGGCTGCG9000.16364618240730808No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT8710.1583731387519615No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA8610.15655484783632473No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC8470.15400924055443327No Hit
TTTACGGGTCGGCGGCGGCGGCTGCTGTTGACGCTGCTGCAGGT8210.1492816841737777No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG7870.14309949506061273No Hit
AGCGCCGGTCGGAGGCGGGCAAACGTAGAAGTTTGCGTCGGTGT7490.13618998958119305No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA7220.1312806041089738No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC5840.10618818947318659No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)