FastQCFastQC Report
Wed 8 May 2024
EGAF00007962487

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962487
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences549967
Total Bases17 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG43540.7916838646682437No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG27320.49675707815196185No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA27170.4940296417785067No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT17910.32565590299054303No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG15080.27419827007802283No Hit
TTCACTCCGATCAAGAAACCGGGTACCTCCG14400.2618338918516929No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG13550.2463784190687805No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG13200.24001440086405182No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA12150.2209223462498659No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA10660.19382981160687823No Hit
GTTGCGACCCCACACGCCTCCGCGCGCGCTC8960.16291886604105338No Hit
GCTTGGGCGCTGAAAAACCCGCACCTGGCAT8940.16255520785792602No Hit
CCAGCGGCTGAAGCTCACGCCGCGCGTTCCG8770.15946411330134352No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8640.15710033511101576No Hit
CCGAAGAAAAACCGTAAACCGAAGCCACCGA8620.1567366769278884No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT7830.142372178694358No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)