FastQCFastQC Report
Wed 8 May 2024
EGAF00007962488

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962488
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences532862
Total Bases23.4 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT30170.5661878685288123No Hit
GCGGACGGACATCTGAGACGGGGAACGCGGTGGGTTCGGGGTCC18920.3550637876223112No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA18580.3486831487326925No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT18150.3406135171958218No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA17820.3344205441558978No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA15550.2918203962752082No Hit
AGACGGCGGCGGGGTAGGTTTGACCGGAACTGGTTTCGGCACTG14620.27436747225360414No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG14460.27136481865848944No Hit
GACCGGCCATTCCGGGGTGCGCGGACGTGGACGACCGTGAATAG12610.23664663646497594No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG12590.2362713047655866No Hit
AACGCAGGCACCGCGACGACGACGGGACGGTGGTGGGGTCGGTT11810.22163336848940252No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG11330.21262540770405847No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT9630.18072221325596494No Hit
GTGCTGGCTACGCGGGGTCCACGGACCAGCATAGCCCGGGTAGG8780.1647706160319182No Hit
GCTCGGCTCCTGCTGCATCTGGGTGATTTCGCGGCCAGCACGCA8240.15463666014840616No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA7620.14300137746733674No Hit
CCACTGTTCCGGAACCAGTGGACCTTCCATCGGCTGCTGAGGCA6290.11804181945794597No Hit
ACGATCGCCGAAGCGGCTGGATTTGGAAGTACCGGTGCCGAAAC5540.1039668807308459No Hit
GGACTGGTCCGGCACGTGCAGAACCGGCAGGTGCATGCGAGGCG5340.10021356373695253No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)