FastQCFastQC Report
Wed 8 May 2024
EGAF00007962489

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962489
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences532862
Total Bases16.5 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG42530.7981428587514214No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT37020.6947389755696597No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA30210.566938531927591No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC18730.3514981364781125No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT18210.3417395122939898No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC16500.3096486519962016No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC15170.28468909398681086No Hit
GCAGAAGCGCAGTCCACTCCGGAGCGTCCTG14940.2803727794438335No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC13250.24865725084543466No Hit
ACTAGCGAACCGTGCGAAGCGCTGGACCTGT13160.24696825819818263No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC11570.21712938809673046No Hit
GACAAAGCTGAAGCACAGTCCACTCCGGAAC11270.21149941260589045No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC10670.2002394616242104No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9770.1833495351516903No Hit
ATCGTCACCCCACCGTCCGCGCGTCCGCGTA8870.16645960867917023No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC8240.15463666014840616No Hit
GTGGCCCCGCTGCGTGCGTCCATGGGTCCGG6470.12141980475244998No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5460.10246555393328854No Hit
CCGCCAGCCCCGCAGGCGCCTTACCAGGGTT5430.10190255638420453No Hit
TTCGGCGGTGGCATCGAAGCACTGGATGGCG5420.10171489053450987No Hit
CCGCTGCCGCCGGCAACGCTGACCGTTCCGC5350.1004012295866472No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)