FastQCFastQC Report
Wed 8 May 2024
EGAF00007962490

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962490
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences556302
Total Bases24.4 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT31430.5649808916739469No Hit
GCGGACGGACATCTGAGACGGGGAACGCGGTGGGTTCGGGGTCC19920.3580788852098321No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT19480.3501695122433498No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA19320.3472933766191745No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA19200.3451362749010429No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA16950.30469061768607697No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG15080.2710757825785275No Hit
AGACGGCGGCGGGGTAGGTTTGACCGGAACTGGTTTCGGCACTG14240.25597607055160687No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG13910.2500440408267452No Hit
GACCGGCCATTCCGGGGTGCGCGGACGTGGACGACCGTGAATAG13380.2405168415716643No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG12490.22451833716218886No Hit
AACGCAGGCACCGCGACGACGACGGGACGGTGGTGGGGTCGGTT11710.210497175994334No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT9860.17724185783980645No Hit
GTGCTGGCTACGCGGGGTCCACGGACCAGCATAGCCCGGGTAGG9840.1768823408867845No Hit
GCTCGGCTCCTGCTGCATCTGGGTGATTTCGCGGCCAGCACGCA9000.1617826288598639No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA8400.15099712026920628No Hit
CCACTGTTCCGGAACCAGTGGACCTTCCATCGGCTGCTGAGGCA6720.12079769621536503No Hit
ACGATCGCCGAAGCGGCTGGATTTGGAAGTACCGGTGCCGAAAC6030.1083943613361088No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG5720.10282184856426906No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)