FastQCFastQC Report
Wed 8 May 2024
EGAF00007962491

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962491
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences556302
Total Bases17.2 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT38030.6836214861711803No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA31990.5750473663585607No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC20340.36562874122329236No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT19980.35915743606889783No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC18480.3321936645922538No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC15950.28671477003498097No Hit
GCAGAAGCGCAGTCCACTCCGGAGCGTCCTG14990.26945795628992886No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC14770.2655032698066877No Hit
ACTAGCGAACCGTGCGAAGCGCTGGACCTGT14380.2584926892227603No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC13090.23530384575284646No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC11960.214991137907108No Hit
GACAAAGCTGAAGCACAGTCCACTCCGGAAC11350.20402587083993948No Hit
ATCGTCACCCCACCGTCCGCGCGTCCGCGTA10200.18335364604117907No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10060.18083702737002563No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9920.1783204086988722No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC8890.15980528561824334No Hit
GTGGCCCCGCTGCGTGCGTCCATGGGTCCGG6720.12079769621536503No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA6080.1092931537186636No Hit
TTCGGCGGTGGCATCGAAGCACTGGATGGCG5960.10713605200053208No Hit
CCGCCAGCCCCGCAGGCGCCTTACCAGGGTT5820.10461943332937865No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)