FastQCFastQC Report
Wed 8 May 2024
EGAF00007962492

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962492
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences539005
Total Bases23.7 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT30380.5636311351471693No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA19440.3606645578426916No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT18900.35064609790261686No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA18710.347121084219998No Hit
GCGGACGGACATCTGAGACGGGGAACGCGGTGGGTTCGGGGTCC18290.33932894871105096No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA15990.2966577304477695No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG14130.26214970176528973No Hit
AGACGGCGGCGGGGTAGGTTTGACCGGAACTGGTTTCGGCACTG13920.25825363401081625No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG13450.24953386332223262No Hit
GACCGGCCATTCCGGGGTGCGCGGACGTGGACGACCGTGAATAG12700.23561933562768433No Hit
AACGCAGGCACCGCGACGACGACGGGACGGTGGTGGGGTCGGTT11620.2155824157475348No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG11220.20816133431044237No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT9720.1803322789213458No Hit
GTGCTGGCTACGCGGGGTCCACGGACCAGCATAGCCCGGGTAGG9040.1677164404782887No Hit
GCTCGGCTCCTGCTGCATCTGGGTGATTTCGCGGCCAGCACGCA8660.1606664131130509No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA7970.1478650476340665No Hit
CCACTGTTCCGGAACCAGTGGACCTTCCATCGGCTGCTGAGGCA6310.11706755967013294No Hit
ACGATCGCCGAAGCGGCTGGATTTGGAAGTACCGGTGCCGAAAC6100.11317149191565942No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)