FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007962493

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962493
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences539005
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG43370.8046307548167456No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT39790.7382120759547685No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA30370.563445608111242No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT18730.34749213829185255No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC18360.34062763796254214No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC17630.32708416433984844No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC15010.2784760809268931No Hit
GCAGAAGCGCAGTCCACTCCGGAGCGTCCTG14310.2654891884119813No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC14160.2627062828730717No Hit
ACTAGCGAACCGTGCGAAGCGCTGGACCTGT13380.24823517407074144No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC11620.2155824157475348No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC11390.21131529392120668No Hit
GACAAAGCTGAAGCACAGTCCACTCCGGAAC11120.2063060639511693No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9770.18125991410098236No Hit
ATCGTCACCCCACCGTCCGCGCGTCCGCGTA9510.17643621116687228No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC8510.15788350757414124No Hit
GTGGCCCCGCTGCGTGCGTCCATGGGTCCGG6380.11836624892162412No Hit
TTCGGCGGTGGCATCGAAGCACTGGATGGCG6070.11261491080787747No Hit
ATGGAATCTTTCGAAGGCCAGGGCGACTCCC5600.10389514011929389No Hit
CCGCCAGCCCCGCAGGCGCCTTACCAGGGTT5480.10166881568816614No Hit

[OK]Adapter Content

Adapter graph