FastQCFastQC Report
Wed 31 May 2023
EGAF00007962494

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962494
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences550945
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG21110.38315984354155136No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC19340.35103322473205134No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG17630.31999564384829704No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT17090.31019430251658514No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA16680.30275254335732243No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA16220.29440325259327155No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG15190.27570810153463593No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA14130.2564684315131275No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA14040.2548348746245088No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA14020.25447186198259353No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT10880.19747887720189855No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT10530.19112615596838162No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG10460.1898556117216782No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA9350.16970841009538157No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG9310.16898238481155106No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT9150.16607828367622904No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGCCGG7740.14048589242120357No Hit
TTTCAGGATAGACGGGCTTGCAACCGGCGGAGCGTTGGATACAG7320.13286262694098322No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA7220.13104756373140694No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC6850.12433182985597474No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT6800.12342429825118659No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT6510.1181606149434154No Hit
CTCGAAGGACGCGTATTTGAACTCCAGCGGTACGCCGATTGGGT6090.11053734946319506No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)