FastQCFastQC Report
Wed 8 May 2024
EGAF00007962495

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962495
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences550945
Total Bases17 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT34420.6247447567361534No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC25800.46828630807067856No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG22210.4031255388468904No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG19740.3582934775703564No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC19680.3572044396446106No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG18990.34468050349853435No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG17740.3219922133788309No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA17340.3147319605405258No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT15510.28151630380528003No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG15300.27770467106516983No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC11180.2029240668306274No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11030.20020147201626295No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC10980.19929394041147483No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG9840.1786022198223053No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG9730.17660565029177142No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9400.17061594170016972No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG8440.15319133488823747No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC8260.14992422111100018No Hit
GTGCCGGTCAGCGGCTCTGCTCCGGGTCGCC6920.1256023741026781No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC6890.12505785513980525No Hit
GCGAAAACCCAGACCGACGATGCAGCACGCC6660.12088320975777983No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA6570.11924965286916117No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6170.11198940003085607No Hit
CAGCGCGGTGATCCGTTCGACAAAAACTACG6110.1109003621051103No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5920.10745174200691539No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)