FastQCFastQC Report
Wed 8 May 2024
EGAF00007962496

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962496
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences526060
Total Bases23.1 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG20800.3953921605900468No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC18950.36022506938372045No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG17720.336843706041136No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT16950.3222065924039083No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA15620.2969243052123332No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG14830.2819070068053074No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA14230.27050146371136374No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA13590.2583355510778238No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA12790.24312816028589893No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA12300.23381363342584496No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT10610.20168802037790365No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG10440.19845644983461963No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT10170.19332395544234499No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG10020.19047256966885906No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA9290.17659582557122763No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT8060.15321446222864313No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGCCGG6980.13268448465954455No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA6960.1323042998897464No Hit
TTTCAGGATAGACGGGCTTGCAACCGGCGGAGCGTTGGATACAG6930.13173402273504922No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT6580.1250807892635821No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC6370.12108884918070183No Hit
CTCGAAGGACGCGTATTTGAACTCCAGCGGTACGCCGATTGGGT5970.11348515378473939No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT5920.11253469186024408No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT5630.10702201269817131No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)