FastQCFastQC Report
Wed 8 May 2024
EGAF00007962497

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962497
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences526060
Total Bases16.3 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG43760.8318442763182906No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT31700.6025928601300232No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC25080.47675170132684486No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG21690.4123103828460632No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC19120.3634566399270045No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG18390.3495798958293731No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG17480.33228148880355857No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG17020.32353723909820176No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA15560.2957837509029388No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG13970.26555906170398813No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT13540.25738508915332853No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC11180.21252328631715012No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC10660.20263848230239898No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10350.1967456183705281No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG9670.18381933619739194No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG8810.1674713910960727No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG7830.14884233737596472No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC7240.1376268866669201No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC6660.12660152834277458No Hit
GTGCCGGTCAGCGGCTCTGCTCCGGGTCGCC6540.12432041972398584No Hit
GCGAAAACCCAGACCGACGATGCAGCACGCC6360.12089875679580275No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA5890.11196441470554688No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5790.1100634908565563No Hit
CAGCGCGGTGATCCGTTCGACAAAAACTACG5760.1094932137018591No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5650.10740219746796942No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)