FastQCFastQC Report
Wed 8 May 2024
EGAF00007962498

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962498
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences549734
Total Bases24.1 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG21740.395463988037851No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC19580.35617225785561746No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG18880.3434388267780417No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA17130.3116052490841025No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT16800.3056023458618168No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA16090.29268700862599No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA14130.257033401608778No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA13770.2504847799117391No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG13370.2432085335816959No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA13250.24102565968268289No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT11060.20118821102569606No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG10610.1930024339043974No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA10410.18936431073937576No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT10370.18863668610637144No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG10170.18499856294134984No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT9010.16389744858422436No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT7160.13024480930777432No Hit
TTTCAGGATAGACGGGCTTGCAACCGGCGGAGCGTTGGATACAG7110.12933527851651888No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGCCGG6960.12660668614275267No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC6950.1264247799845016No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA6670.12133140755347131No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT6530.11878472133795617No Hit
CTCGAAGGACGCGTATTTGAACTCCAGCGGTACGCCGATTGGGT6300.11460087969818131No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)