FastQCFastQC Report
Wed 8 May 2024
EGAF00007962499

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962499
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences549734
Total Bases17 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT32000.5820997064034606No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC26090.4745931668770714No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG23090.42002131940174703No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC20930.38072958921951344No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG19490.3545351024313577No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA18490.33634448660624955No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG18200.3310692080169682No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG17480.31797196462289035No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG15100.274678298959133No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT14820.2695849265281027No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC11920.21683214063528905No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC11740.21355782978676963No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG11280.20519014650721987No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10500.1910014661636355No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG9810.17844994124431088No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9390.17080988259776547No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC7990.14534302044261407No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG7840.14261442806884783No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC7550.1373391494795665No Hit
GCGAAAACCCAGACCGACGATGCAGCACGCC6790.1235142814524843No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA6510.11842090902145401No Hit
GTGCCGGTCAGCGGCTCTGCTCCGGGTCGCC6450.11732947207194752No Hit
CAGCGCGGTGATCCGTTCGACAAAAACTACG6000.10914369495064885No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5930.10787035184289129No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5860.10659700873513371No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC5500.10004838703809478No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)