FastQCFastQC Report
Wed 8 May 2024
EGAF00007962500

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962500
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences532006
Total Bases23.4 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG21690.4077021687725326No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC18900.3552591512125803No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG18200.34210140487137364No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA16990.3193573004815735No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT15810.29717709950639654No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA15100.2838313853603155No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG14430.27123754243373194No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA14110.2652225726777518No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA13110.24642579219031363No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA12930.24304237170257478No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT10470.19680229170347704No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG10330.1941707424352357No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG10000.1879678048743811No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT9980.18759186926463237No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA9690.1821408029232753No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT8470.1592087307286008No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGCCGG7320.13759243316804698No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA6920.13007372097307174No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC6900.129697785363323No Hit
TTTCAGGATAGACGGGCTTGCAACCGGCGGAGCGTTGGATACAG6670.1253745258512122No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT6660.12518655804633783No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT6050.11372052194900056No Hit
CTCGAAGGACGCGTATTTGAACTCCAGCGGTACGCCGATTGGGT5470.10281838926628646No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)