FastQCFastQC Report
Wed 8 May 2024
EGAF00007962501

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962501
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences532006
Total Bases16.4 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG42050.7904046194967725No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT35620.6695413209625456No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC25380.47706228877117923No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG22840.42931846633308646No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC19500.36653721950504314No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG18440.3466126321883588No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG18040.33909391999338356No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA16170.30394394048187423No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG15830.2975530351161453No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT14380.27029770340936005No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG14190.26672631511674677No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC11400.21428329755679448No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC10400.19548651706935635No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10300.19360683902061254No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG10140.19059935414262244No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG9890.18590015902076293No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG7850.14755472682638918No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC7820.14699082341176603No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC6760.12706623609508164No Hit
GTGCCGGTCAGCGGCTCTGCTCCGGGTCGCC6280.11804378146111134No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA6060.11390848975387495No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5970.11221677951000553No Hit
GCGAAAACCCAGACCGACGATGCAGCACGCC5930.11146490829050801No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5850.10996116585151294No Hit
CAGCGCGGTGATCCGTTCGACAAAAACTACG5790.10883335902226667No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)