FastQCFastQC Report
Wed 8 May 2024
EGAF00007962502

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962502
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences578093
Total Bases25.4 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT30770.5322672995521481No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC26840.4642851582703821No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT25530.4416244445097934No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA18310.3167310450048694No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA17360.3002977029647479No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT15500.26812294907566775No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC12280.21242256868704515No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT11970.20706010970553182No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG11840.20481133658425202No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA11060.19131869785657324No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT10890.18837799454413043No Hit
TTCATCACCATCACCGCCTTCGTCACCGTCATCGCCGTCATCGC10640.1840534308493616No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT10430.18042079734575578No Hit
CTGTTCGGTTTCCAGTTCGCCTACGCTCACTTTGGTGTTGTTAC10330.17869097186784824No Hit
GTCCTGATCTTTCTTCGGTGGGATTGCCATGAAGCTCAGGTGCG9870.1707337746694736No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT9280.16052780434981914No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT9200.15914394396749312No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA9160.15845201377633011No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT9130.15793306613295785No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA8670.14997586893458317No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT8380.14495937504865133No Hit
TTTCACGCATTTCTTGCCGTCCACTACGTAAACGCCGGACGGCA8270.14305656702295305No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC7730.13371550944225236No Hit
CTCCAGGGTCGCGACGGTGTTTTCGATTGCTTCCGTAGTCGGGG7730.13371550944225236No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG7690.13302357925108937No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG7640.1321586665121356No Hit
GGTCGGGGTGCTGGTTGGTTCACCAGAGGCGATGGTGTTGATAG7440.12869901555632052No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG7230.1250663820527147No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT7110.12299059147922566No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA6900.11935795797561984No Hit
GGTGGAGTGCACAGTCGGTTCTGCGCTGGCGATGGTGTTAATCG6670.11537935937643252No Hit
CTGGCCACGGTGTTTGCCGAACCAGCCACCTTTTTTACGACGAC6630.1146874291852695No Hit
AATATCAACGGTCTGGACACCCAGGCCCGGTGCCACTTTCTTGA6530.11295760370736195No Hit
TTCCTGGCCTTCTTCACCCTCATCACCGTCACCACCTTCATCGC6360.11001690039491915No Hit
GCGAATGTATGCCAGCCACGCTTCGTCTTCAGCCAGGATATCGC6340.10967093529933765No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC6300.10897900510817464No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)