FastQCFastQC Report
Wed 8 May 2024
EGAF00007962503

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962503
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences578093
Total Bases17.9 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC36120.6248129626202013No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG31180.539359584011569No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT26060.45079251954270333No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT19920.34458123519918077No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA19030.3291857884458037No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT17750.30704402232858724No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA15810.2734854080571811No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC14270.24684609569740507No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG13070.22608818996251467No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC12530.216747132381814No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG11600.20065975543727393No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT11480.19858396486378488No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG11110.192183610595527No Hit
CTGTCTGCTGAGCAGCTGAACGTCACTGACG10670.18457237849273386No Hit
GCCGAGGGTCTGAAGGACGCGATTAAAGACC10630.18388044830157085No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA10100.17471237326866093No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG9870.1707337746694736No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9360.16191166473214516No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG9340.16156569963656367No Hit
GCCAAACCGGTAGCGGTTCGCTCTCCGGCAC9340.16156569963656367No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA8970.15516534536830578No Hit
ACCATGACCCGTCACCCGCACCCACATCTGT8840.15291657224702598No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC8670.14997586893458317No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG8480.14668920052655887No Hit
ACCGTCCCGGCAAAATCCTGCCAGGCTCAGC8180.14149972409283626No Hit
CCGAAACGTCTGAACCTGTACATCGATGGTG8070.13959691606713798No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG8040.1390779684237657No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC7850.1357913000157414No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT7680.1328505967032986No Hit
TCCTACACCAACGGCAAACTGACTATCACCC7630.13198568396434485No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT7330.12679620753062223No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC7200.12454743440934245No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC7110.12299059147922566No Hit
ATGGACGAACTGCAGCCGACCATGCAACTGA6690.11572532447201402No Hit
ACCGTTCCTGCCAAATCCTGCCAGGACCAGC6690.11572532447201402No Hit
GCACCAACCTGCAACATCAAAGTAACCGTTT6500.11243865606398971No Hit
GGCCTGACTTCTTATGATGAACCGCTGGTTA6420.11105479568166367No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTC6120.10586531924794108No Hit
CCACGTCGCCCGCCGCCGGGCCGTCGTCCTT6100.10551935415235958No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)