FastQCFastQC Report
Wed 8 May 2024
EGAF00007962506

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962506
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences576674
Total Bases25.3 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT30780.5337504378557035No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC27060.4692425876665152No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT25570.4434047659509532No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA18850.3268744559317743No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA17440.3024238998116787No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT15630.27103701571425104No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG12340.21398571810069467No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT11760.20392804253356314No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC11730.20340781793526325No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA11440.1983789801516975No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT11360.19699171455623107No Hit
TTCATCACCATCACCGCCTTCGTCACCGTCATCGCCGTCATCGC11040.1914426521743654No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT10070.1746220568293351No Hit
CTGTTCGGTTTCCAGTTCGCCTACGCTCACTTTGGTGTTGTTAC9870.1711538928406691No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT9480.16439097306277028No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT9370.16248348286900396No Hit
GTCCTGATCTTTCTTCGGTGGGATTGCCATGAAGCTCAGGTGCG9280.16092280907410425No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT8900.1543332974956388No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT8490.1472235613188734No Hit
TTTCACGCATTTCTTGCCGTCCACTACGTAAACGCCGGACGGCA8400.1456628875239737No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA8300.14392880552964066No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA8020.1390733759455082No Hit
CTCCAGGGTCGCGACGGTGTTTTCGATTGCTTCCGTAGTCGGGG7910.13716588575174188No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT7590.13161682336987623No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG7480.12970933317610991No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG7210.12502731179141074No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA7120.12346663799651103No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG7110.12329322979707774No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC7100.12311982159764441No Hit
GGTCGGGGTGCTGGTTGGTTCACCAGAGGCGATGGTGTTGATAG7100.12311982159764441No Hit
CTGGCCACGGTGTTTGCCGAACCAGCCACCTTTTTTACGACGAC6870.11913143301067848No Hit
GCGAATGTATGCCAGCCACGCTTCGTCTTCAGCCAGGATATCGC6680.11583667722144574No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC6600.11444941162597932No Hit
GGTGGAGTGCACAGTCGGTTCTGCGCTGGCGATGGTGTTAATCG6480.1123685132327797No Hit
AATATCAACGGTCTGGACACCCAGGCCCGGTGCCACTTTCTTGA6230.10803330824694715No Hit
CTCACCTACAGAAACTTTAGTGTTGTTGCCTTTGTCACCGAACT5970.1035246950616813No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)