FastQCFastQC Report
Wed 8 May 2024
EGAF00007962508

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962508
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences543609
Total Bases23.9 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT12330.22681743679740402No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT7000.12876902332374923No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTTTGA5590.10283126291139404No Hit
GCCCGGCAGAACATCGGAGGCGTTACGGTAGTGCTGACCTACGC5550.10209543992097261No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)