FastQCFastQC Report
Wed 8 May 2024
EGAF00007962509

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962509
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences543609
Total Bases16.8 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12400.22810512703064148No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9660.17770125218677393No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7160.13171231528543492No Hit
GACATGGCAGCTCCGCCAACCCTGCCGCAGC5790.10651037786350115No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC5740.10559059912547439No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)