FastQCFastQC Report
Wed 8 May 2024
EGAF00007962510

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962510
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences521340
Total Bases22.9 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT11550.22154448152836922No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6630.12717228679940154No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTTTGA5850.11221084129358959No Hit
GCCCGGCAGAACATCGGAGGCGTTACGGTAGTGCTGACCTACGC5700.1093336402347796No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGTTGG5240.10051022365442897No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)