FastQCFastQC Report
Wed 8 May 2024
EGAF00007962511

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962511
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences521340
Total Bases16.1 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG43420.8328537998235316No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11510.22077722791268656No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6580.1262132197797982No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC5870.11259446810143092No Hit
GACATGGCAGCTCCGCCAACCCTGCCGCAGC5780.11086814746614493No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)