FastQCFastQC Report
Wed 8 May 2024
EGAF00007962513

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962513
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences529781
Total Bases16.4 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG42370.7997644309629829No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11530.21763709910321435No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7010.1323188260809655No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC6230.11759576126739162No Hit
GACATGGCAGCTCCGCCAACCCTGCCGCAGC5740.108346656448608No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)