FastQCFastQC Report
Wed 8 May 2024
EGAF00007962514

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962514
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences557366
Total Bases24.5 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA34800.6243653183007216No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA29760.5339399963399274No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC24940.4474618114488505No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA23690.42503489628000274No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG22350.4009932432189979No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT20480.3674425781264017No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTTTTT19580.3512951992048313No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT18750.33640372753271636No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG18550.3328154211057007No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT15890.2850909456263927No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA15870.28473211498369116No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCTTCT15370.275761348916152No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT14810.26571409092050824No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA14800.2655346755991575No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG13190.23664880886168158No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG12810.22983102665035185No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG12220.21924552269065567No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG12030.21583663158499083No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG11250.20184223651962982No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT11160.20022749862747277No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT10960.19663919220045717No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA10880.1952038696296509No Hit
CGGGTGGGTTTTCGGGGTCGGCCAAGGCAGTTTACGCGGCTTTT10880.1952038696296509No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG10300.18479778099130553No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG10080.18085064392158834No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA9780.17546818428106487No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG9200.1650620956427195No Hit
AACGGTTACGCTGCTCTGTTCAGACGGACCCGGGCGTTCCGGGG9190.16488268032136874No Hit
ACGGCGGGCAACACGACGACGACGACGTTTCATTTTTGCGTAGC9080.16290911178651013No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC9060.16255028114380857No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG9030.1620120351797562No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG8620.15465600700437415No Hit
CAGCGTCGGAATGGAGCGACGGGTCTTGATACCGTTGCCGCTTT8240.14783822479304443No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA8140.1460440715795366No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG8000.14353225708062567No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG7820.14030278129631157No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT7440.13348499908498185No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG7430.13330558376363108No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGGATT7340.13169084587147403No Hit
AACGGTGACGCTAGACTGTTCGGAAGGACCCGGACGTTCTGGAG7260.13025552330066778No Hit
TTTGCCGGATGCGAAACGGCGGCCGGCAACCTCGCATACTGGAC7190.12899961605121232No Hit
ATCGCTAATCTGTACTTTTTTAGCTTCGCGGCCACGAGAACGGG7140.1281025394444584No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG6990.12541130962419667No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT6700.12020826530502399No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG6170.11069925327343254No Hit
CAGACGTGGTTTGGTGGACGGTTTGTTAGTCTGGGTAGAAGTAG6140.1101610073093802No Hit
TTTCACGCATTTCTTGCCGTCCACTACGTAAACGCCGGACGGCA6080.1090845153812755No Hit
AACGTGACGGGTCTGAACGGTGTCAGACGGGGCCAGCGGGTTGG6060.10872568473857393No Hit
AGTTTCGCTACCGTTGAAGTGCATGTAGGTGGTGCGGGTTTCCA5740.10298439445534892No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT5720.10262556381264736No Hit
GCGGACGGACATCTGAGACGGGGAACGCGGTGGGTTCGGGGTCC5710.10244614849129656No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)