FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007962516

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962516
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences533477
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA32250.604524656170744No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA27560.5166108379555256No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC23700.4442553287208258No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA21830.40920227113821217No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG21430.401704290906637No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTTTTT19810.3713374709687578No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG19520.36590143530086583No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT19280.3614026471619207No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT16020.3002941082745835No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT16010.30010665876879417No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT15100.28304875374196076No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA15020.2815491576956457No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCTTCT14430.27048963685407246No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA13840.2594301160124991No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG12330.23112524063830306No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG12320.2309377911325137No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG11710.21950337127936162No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT11070.20750660290884143No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG11000.2061944563683158No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT10680.20019607218305568No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG10580.1983215771251619No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG10030.18801185430674613No Hit
CGGGTGGGTTTTCGGGGTCGGCCAAGGCAGTTTACGCGGCTTTT9980.18707460677779925No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA9960.18669970776622047No Hit
ACGGCGGGCAACACGACGACGACGACGTTTCATTTTTGCGTAGC9330.17489038890148967No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC9200.17245354532622775No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG8950.1677673076814933No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG8850.16589281262359953No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG8840.16570536311781014No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA8680.1627061710251801No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG8440.15820738288623504No Hit
CAGCGTCGGAATGGAGCGACGGGTCTTGATACCGTTGCCGCTTT8320.15595798881676248No Hit
AACGGTTACGCTGCTCTGTTCAGACGGACCCGGGCGTTCCGGGG8120.15220899870097493No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA8030.1505219531488705No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG7900.1480851095736086No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG7600.14246162439992727No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG7510.14077457884782285No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT7440.1394624323072972No Hit
TTTGCCGGATGCGAAACGGCGGCCGGCAACCTCGCATACTGGAC7290.13665068972045655No Hit
ATCGCTAATCTGTACTTTTTTAGCTTCGCGGCCACGAGAACGGG7160.13421384614519463No Hit
AACGGTGACGCTAGACTGTTCGGAAGGACCCGGACGTTCTGGAG6670.12502882036151514No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT6530.12240452728046383No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG6370.11940533518783378No Hit
TTTCACGCATTTCTTGCCGTCCACTACGTAAACGCCGGACGGCA6290.11790573914151875No Hit
AACGTGACGGGTCTGAACGGTGTCAGACGGGGCCAGCGGGTTGG6270.11753084012993999No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGGATT6020.11284460248520554No Hit
AGTTTCGCTACCGTTGAAGTGCATGTAGGTGGTGCGGGTTTCCA5880.11022030940415425No Hit
CAGACGTGGTTTGGTGGACGGTTTGTTAGTCTGGGTAGAAGTAG5820.10909561236941798No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT5750.10778346582889234No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA5680.1064713192883667No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG5590.1047842737362623No Hit
AGACGCTGCGGAGGTCGGAGCAACAGCCGGATCCGGTTTACGGG5590.1047842737362623No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA5510.10328467768994727No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)