FastQCFastQC Report
Wed 8 May 2024
EGAF00007962518

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962518
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences554919
Total Bases24.4 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA34700.6253164876315281No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA30090.5422413000816336No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC24080.4339372052497752No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA24040.43321637932743334No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG22850.41177180813776426No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTTTTT21370.385101249011117No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT20680.37266700185072055No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT17750.3198665030391823No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG17160.30923432068464046No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT16340.2944573892766332No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA15460.27859921898511314No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCTTCT15180.2735534375287204No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA14990.27012951439759675No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT14560.2623806357324222No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG13640.24580163951856038No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG12140.21877066743074214No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG11970.21570715726078943No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT11820.21300406005200762No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG11760.21192282116849487No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG11300.20363332306156395No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT10860.1957042379158039No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA10620.191379282381753No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG10420.18777515277004392No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG10330.18615329444477483No Hit
CGGGTGGGTTTTCGGGGTCGGCCAAGGCAGTTTACGCGGCTTTT10080.18164813243013847No Hit
ACGGCGGGCAACACGACGACGACGACGTTTCATTTTTGCGTAGC9730.17534090560964755No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG9640.17371904728437843No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA9560.1722773954396948No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC9060.16326707141042204No Hit
AACGGTTACGCTGCTCTGTTCAGACGGACCCGGGCGTTCCGGGG9050.16308686492983662No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG8900.16038376772105478No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG8850.1594827353181275No Hit
CAGCGTCGGAATGGAGCGACGGGTCTTGATACCGTTGCCGCTTT8840.15930252883754206No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA8500.1531755084976366No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG8410.1515536501723675No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG8270.14903075944417113No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG7820.14092146781782566No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT7580.13659651228377476No Hit
TTTGCCGGATGCGAAACGGCGGCCGGCAACCTCGCATACTGGAC7560.13623609932260386No Hit
ATCGCTAATCTGTACTTTTTTAGCTTCGCGGCCACGAGAACGGG7480.13479444747792022No Hit
AGTTTCGCTACCGTTGAAGTGCATGTAGGTGGTGCGGGTTTCCA7200.12974866602152746No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGGATT6990.12596432992923293No Hit
AACGGTGACGCTAGACTGTTCGGAAGGACCCGGACGTTCTGGAG6940.12506329752630566No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG6870.12380185216220746No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT6770.1219997873563529No Hit
TTTCACGCATTTCTTGCCGTCCACTACGTAAACGCCGGACGGCA6560.11821545126405836No Hit
CAGACGTGGTTTGGTGGACGGTTTGTTAGTCTGGGTAGAAGTAG6250.11262905036590926No Hit
AACGTGACGGGTCTGAACGGTGTCAGACGGGGCCAGCGGGTTGG6170.11118739852122561No Hit
GCTGGCAGCGGAGGTAGGTGCTACCGCCGGGTCCGGCTTACGGG6150.1108269855600547No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG5880.10596141058424743No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)