FastQCFastQC Report
Wed 8 May 2024
EGAF00007962520

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962520
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences539581
Total Bases23.7 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA32970.6110296693174889No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA29270.5424579442196815No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC23610.43756173771871143No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA22650.41977015499063164No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG21310.3949360707660203No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTTTTT19810.3671367227533957No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG19160.3550903386145917No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT18810.3486038240783126No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT17040.3158005934234156No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT15800.29281979906631256No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCTTCT15390.2852213106095285No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT15180.28132940188776107No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA14790.27410157140447866No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA14720.2728042684972229No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG12560.2327732073590434No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG11960.22165346815399356No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG11910.2207268232202394No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG11170.20701247820067792No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT10820.20052596366439884No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG10620.19681938392938225No Hit
CGGGTGGGTTTTCGGGGTCGGCCAAGGCAGTTTACGCGGCTTTT10480.1942247781148706No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT10400.19274214622086397No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA10380.1923714882473623No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG10310.1910741853401065No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC9000.16679608807574767No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG8990.16661075908899683No Hit
AACGGTTACGCTGCTCTGTTCAGACGGACCCGGGCGTTCCGGGG8870.16438681124798687No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG8840.16383082428773438No Hit
ACGGCGGGCAACACGACGACGACGACGTTTCATTTTTGCGTAGC8790.16290417935398022No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA8530.15808562569845863No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG8480.15715898076470447No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG8390.15549101988394698No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA8130.1506724662284254No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT8010.1484485183874154No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG8000.1482631894006646No Hit
CAGCGTCGGAATGGAGCGACGGGTCTTGATACCGTTGCCGCTTT7770.1440006227053955No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG7750.14362996473189382No Hit
ATCGCTAATCTGTACTTTTTTAGCTTCGCGGCCACGAGAACGGG7460.13825542411611974No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG7270.13473417336785395No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGGATT6920.12824765883157485No Hit
AACGGTGACGCTAGACTGTTCGGAAGGACCCGGACGTTCTGGAG6900.12787700085807321No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG6750.12509706605681076No Hit
TTTGCCGGATGCGAAACGGCGGCCGGCAACCTCGCATACTGGAC6670.1236144341628041No Hit
AACGTGACGGGTCTGAACGGTGTCAGACGGGGCCAGCGGGTTGG6250.11583061671926922No Hit
CAGACGTGGTTTGGTGGACGGTTTGTTAGTCTGGGTAGAAGTAG6160.11416265583851173No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG6130.11360666887825924No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT6120.11342133989150842No Hit
TTTCACGCATTTCTTGCCGTCCACTACGTAAACGCCGGACGGCA5890.1091587731962393No Hit
AGTTTCGCTACCGTTGAAGTGCATGTAGGTGGTGCGGGTTTCCA5840.10823212826248516No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA5560.10304291663346188No Hit
GCTGGCAGCGGAGGTAGGTGCTACCGCCGGGTCCGGCTTACGGG5550.10285758764671106No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT5450.10100429777920275No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)