FastQCFastQC Report
Wed 8 May 2024
EGAF00007962522

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962522
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences514468
Total Bases22.6 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT21520.4182961816867133No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC17330.33685282660923516No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT14940.2903970703717238No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA12120.2355831655224426No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT10330.2007899422315868No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA10040.19515305130736993No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA9320.18115801177138324No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC9000.17493799419983364No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA8110.15763857032896117No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA8020.15588919038696283No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT7770.1510298016591897No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC6990.13586850882853743No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT6930.13470225553387188No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA6470.12576098027476929No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT5760.11196031628789352No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC5500.10690655201100942No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)