FastQCFastQC Report
Wed 8 May 2024
EGAF00007962523

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962523
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences514468
Total Bases15.9 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC22360.43462372781203107No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG21910.4258768281020394No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT19460.3782548185698625No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14960.2907858214699457No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT13470.26182386465241764No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG11120.21614561061135No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC10950.2128412262764642No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9830.19107116477604047No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG9200.17882550518205215No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8850.17202236096316972No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7840.15239043050296616No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG7330.14247727749830894No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT6780.13178662229720797No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6770.13159224674809705No Hit
ATGTCTGACGAAGGCCCGGGCACCGGTCCGG6130.11915221160499778No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC6000.11662532946655575No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5980.1162365783683339No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG5940.11545907617189018No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5350.10399091877434555No Hit
GGTGGTGATAACCATGGCCGTGGCCGTGGCC5330.1036021676761237No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC5320.10340779212701277No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)