FastQCFastQC Report
Wed 8 May 2024
EGAF00007962524

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962524
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences494262
Total Bases21.7 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT19660.39776474825092767No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC16330.3303915736997787No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT13970.28264361816202743No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA11450.23165851309629304No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT10170.205761316872428No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA9620.19463361536998597No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA8480.17156892498310614No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC8000.16185747639915674No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA7870.15922729240767042No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT7810.15801336133467675No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA7710.1559901428796873No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC6780.1371742112482853No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT6610.13373473987480325No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA5710.1155257737798981No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT5450.11026540579692552No Hit
CTGGCCACGGTGTTTGCCGAACCAGCCACCTTTTTTACGACGAC5320.10763522180543923No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC5090.10298181935896346No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)