FastQCFastQC Report
Wed 8 May 2024
EGAF00007962525

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962525
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences494262
Total Bases15.3 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG40540.8202127616527267No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC20490.4145574614273401No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG19700.39857403563292343No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT18260.36943968988107523No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14000.2832505836985243No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT12730.25755570932015814No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG11450.23165851309629304No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC9590.19402664983348913No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9090.18391055755854183No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8950.18107805172155658No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8050.16286908562665145No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG6670.13494867094779692No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT6570.13292545249280746No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5930.11997685438087492No Hit
ATGTCTGACGAAGGCCCGGGCACCGGTCCGG5820.11775131408038651No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC5770.11673970485289178No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC5600.1133002334794097No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5600.1133002334794097No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5320.10763522180543923No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG5230.1058143251959487No Hit

[OK]Adapter Content

Adapter graph