FastQCFastQC Report
Wed 8 May 2024
EGAF00007962526

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962526
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences515420
Total Bases22.6 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT22130.42935858135113114No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC17880.3469015560125723No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT14620.2836521671646424No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA12900.25028132396880215No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT10570.20507547243025104No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA9810.19033021613441464No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA9360.1815994722750378No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA8810.1709285631135773No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC8700.16879438128128516No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT8150.1581234721198246No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA8110.1573474059989911No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC6630.1286329595281518No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT6540.12688681075627642No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT5960.11563385200419075No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA5730.11117147180939815No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC5640.1094253230375228No Hit
CTGGCCACGGTGTTTGCCGAACCAGCCACCTTTTTTACGACGAC5220.1012766287687711No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)