FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007962527

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962527
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences515420
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC23360.4532226145667611No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG22280.43226882930425675No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT19080.3701835396375771No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14900.2890846300104769No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT14320.27783167125839126No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG11660.2262232742229638No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC10710.20779170385316828No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA10390.20158317488650035No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG9230.179077257382329No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8930.17325676147607777No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8260.16025765395211672No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG7270.1410500174614877No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT6310.12242443056148383No Hit
ATGTCTGACGAAGGCCCGGGCACCGGTCCGG6150.11932016607814985No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6080.11796205036669123No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6050.11738000077606613No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG5880.11408171976252376No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC5610.10884327344689768No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC5520.1070971246750223No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5440.10554499243335533No Hit

[OK]Adapter Content

Adapter graph