FastQCFastQC Report
Wed 8 May 2024
EGAF00007962528

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962528
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences500510
Total Bases22 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT20540.41038141096082No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC16740.3344588519709896No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT14040.28051387584663645No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA11960.2389562646100977No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT10370.2071886675590897No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA9750.1948013026712753No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA8860.17701944017102555No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC8090.1616351321651915No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA8060.1610357435415876No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA7980.1594373738786438No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT7670.15324369143473657No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC6880.13745979101316658No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT6660.13306427444007113No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA5450.10888893328804619No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT5350.10689097120936644No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC5110.10209586222053506No Hit
CTGGCCACGGTGTTTGCCGAACCAGCCACCTTTTTTACGACGAC5050.10089708497332721No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)