FastQCFastQC Report
Wed 8 May 2024
EGAF00007962529

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962529
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences500510
Total Bases15.5 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG39510.789394817286368No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC21500.4295618469161456No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG21210.42376775688797425No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT19910.39779424986513756No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13820.276118359273541No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT13440.26852610337455796No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG11940.23855667219436177No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC10040.20059539269944657No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9350.1868094543565563No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8600.1718247387664582No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7730.15444246868194442No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG7280.14545163932788555No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT6830.1364608099738267No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5630.11248526502966973No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC5580.11148628399032987No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5550.11088689536672594No Hit
ATGTCTGACGAAGGCCCGGGCACCGGTCCGG5530.11048730295098999No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC5320.10629158258576252No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5280.10549239775429062No Hit
GGTGGTGATAACCATGGCCGTGGCCGTGGCC5230.10449341671495076No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG5200.10389402809134682No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)