FastQCFastQC Report
Wed 8 May 2024
EGAF00007962541

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962541
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences491831
Total Bases15.2 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG39900.8112542723008512No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA27090.550798953298999No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT16270.3308046869758108No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA15920.32368842142931215No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG13610.2767210688224207No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA13560.27570445945863514No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC13060.2655383658207799No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG12980.26391179083872307No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12500.254152340946382No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT12280.24967925974572566No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA11980.24357960356301248No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG10510.213691288267718No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA10370.2108447820491185No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG10170.2067783445939764No Hit
TCTACTGCCAAGAGCTCCGTATCCAACGCGC9280.188682697918594No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG9080.1846162604634519No Hit
GCCGTCCGTTATTTCCGCGGCCGCGGCTCCG8710.17709335117143898No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG8170.16611397004255526No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG7770.15798109513227104No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7700.1565578420229713No Hit
GTGCGTTATTTCCGTGGCCGCGGCAGCGGTT6900.14029209220240285No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG6710.13642897662001785No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6360.12931271107351916No Hit
CGCCTGGACGCAGAACAGCGCGCCCAGCAGA6240.1268728486004339No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA6140.12483962987286283No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6110.1242296642545915No Hit
ATGTCTTCTCGCCGCCGTAGCTCTTCCCGTC6020.12239976739977756No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA5780.11752004245360703No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG5700.11589346747155019No Hit
GCACTGGTAAGCGCTATGGAACGTACTGAAC5420.11020045503435122No Hit
CGCGAAATGATCCGTTATATGGCACTGGTTT5380.10938716754332281No Hit
TCCTCCAACAGCCCGCACGTGGTTAAAACCG5320.10816723630678018No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC5320.10816723630678018No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG5170.10511740821542359No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG5140.10450744259715228No Hit
GTGCCGGTCAGCGGCTCTGCTCCGGGTCGCC5010.10186425825130992No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)