FastQCFastQC Report
Wed 8 May 2024
EGAF00007962543

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962543
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences514889
Total Bases15.9 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA28970.5626455410777856No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA17130.3326930658841032No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT15860.30802755545369975No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG14980.29093649310822334No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA14660.2847215613462319No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG13810.2682131488534422No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC13740.2668536325305066No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13510.2623866503265752No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT13370.259667617680704No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA11850.23014669181124475No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG11050.2146093624062662No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA10660.20703491432133916No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG10600.20586961461596578No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG9990.19402240094466963No Hit
GCCGTCCGTTATTTCCGCGGCCGCGGCTCCG9380.18217518727337348No Hit
TCTACTGCCAAGAGCTCCGTATCCAACGCGC9340.18139832080312457No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9120.17712555521675546No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG8970.174212305953322No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC8470.1645014750752104No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8360.16236509228202584No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG7960.15459642757953657No Hit
GTGCGTTATTTCCGTGGCCGCGGCAGCGGTT7590.147410412729734No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG7430.1443029468487383No Hit
CGCCTGGACGCAGAACAGCGCGCCCAGCAGA6900.13400946611793998No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6660.1293482672964464No Hit
GCACTGGTAAGCGCTATGGAACGTACTGAAC6450.12526971832763956No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA6230.12099695274127044No Hit
ATGTCTTCTCGCCGCCGTAGCTCTTCCCGTC6080.11808370347783698No Hit
CGCGAAATGATCCGTTATATGGCACTGGTTT6010.11672418715490136No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG5950.11555888744952796No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG5790.11245142156853226No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5710.11089768862803438No Hit
GTTGCGACCCCACACGCCTCCGCGCGCGCTC5690.11050925539290993No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG5640.10953817230509877No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC5630.10934395568753653No Hit
TCCTCCAACAGCCCGCACGTGGTTAAAACCG5430.10545962333629189No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5430.10545962333629189No Hit
GTGCCGGTCAGCGGCTCTGCTCCGGGTCGCC5350.10390589039579404No Hit
CAGACCCCGGAACAGAGCACCCCGTCCCGCA5340.10371167377823182No Hit
GGTGCCCCGCGTGGCTCTCCAGCAACCCCGA5240.1017695076026095No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)