FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007962545

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962545
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences498840
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG40340.8086761286183946No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA28440.5701226846283378No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT18580.372464116750862No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA15940.31954133589928635No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG14100.28265576136636994No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA14020.28105204073450407No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG13610.27283297249619115No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC13300.2666185550477107No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13210.26481436933686153No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT11900.23855344399005696No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA11830.23715018843717423No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG10110.20267019485205678No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG10060.20166786945714057No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG9970.1998636837462914No Hit
TCTACTGCCAAGAGCTCCGTATCCAACGCGC9190.18422740758559858No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA9130.18302461711169915No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG9050.1814208964798332No Hit
GCCGTCCGTTATTTCCGCGGCCGCGGCTCCG9040.18122043140084998No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7970.15977066794964317No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG7820.15676369176489457No Hit
GTGCGTTATTTCCGTGGCCGCGGCAGCGGTT7460.1495469489214979No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG7460.1495469489214979No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6960.1395236949723358No Hit
CGCCTGGACGCAGAACAGCGCGCCCAGCAGA6210.12448881404859273No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6090.12208323310079383No Hit
GCACTGGTAAGCGCTATGGAACGTACTGAAC6070.12168230294282735No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG6030.12088044262689439No Hit
TCCTCCAACAGCCCGCACGTGGTTAAAACCG6020.12067997754791117No Hit
CGCGAAATGATCCGTTATATGGCACTGGTTT6010.12047951246892791No Hit
ATGTCTTCTCGCCGCCGTAGCTCTTCCCGTC5720.11466602517841391No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5700.11426509502044743No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG5670.1136636997834977No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA5650.11326276962553122No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG5530.11085718867773235No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5370.10764974741400049No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC5280.10584556170315132No Hit
GTGCCGGTCAGCGGCTCTGCTCCGGGTCGCC5270.10564509662416806No Hit
GTTGCGACCCCACACGCCTCCGCGCGCGCTC5200.10424184107128537No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)