FastQCFastQC Report
Wed 8 May 2024
EGAF00007962547

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962547
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences533858
Total Bases16.5 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA18640.3491565172761296No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT15420.28884085281104716No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9730.18225820349231445No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC8950.1676475766964249No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8690.16277736776446172No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7890.14779210951226732No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7600.14235995339584684No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7440.13936290174540797No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA7170.13430537708529233No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6940.12999711533778643No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6160.11538648854189691No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)