FastQCFastQC Report
Wed 8 May 2024
EGAF00007962549

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962549
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences511363
Total Bases15.8 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG43670.8539921738569274No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA17790.34789376626779805No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT14790.2892270265936331No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC8600.16817798706593945No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7980.1560535275332787No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7820.15292463475065657No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7090.13864906142994313No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6790.13278238746252663No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6670.13043571787556002No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6350.12417793231031576No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5740.11224902857656889No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)