FastQCFastQC Report
Wed 8 May 2024
EGAF00007962551

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962551
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences533586
Total Bases16.5 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA17620.3302185589576938No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT14130.2648120452935422No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10160.1904097933603955No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC9040.16941973739940702No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA8210.15386460664260307No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8180.1533023730007909No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8030.15049120479172992No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7640.14318216744817142No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA7470.1399961768112357No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6660.12481586848230651No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6350.11900612085024719No Hit
ACCAGCGGTAATGTTAGCGTTGGTTATAACC5460.10232652280981885No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)