FastQCFastQC Report
Wed 8 May 2024
EGAF00007962553

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962553
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences518600
Total Bases16 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG41190.7942537601234092No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA17930.34573852680293093No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT16360.31546471268800613No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC8250.15908214423447745No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA8130.15676822213652142No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7730.14905514847666795No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7290.14057076745082916No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7240.13960663324334746No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6390.12321635171615888No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6300.12148091014269186No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5980.1153104512148091No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)