FastQCFastQC Report
Wed 8 May 2024
EGAF00007962562

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962562
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences536325
Total Bases23.5 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA18590.3466181885983312No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA16110.3003775695706894No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT14720.2744604484221321No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC10750.2004381671561087No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA9370.17470750011653383No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT8330.15531627278236143No Hit
TTCGCGGGCACGCTGCAGGATCGCGTGCTGTTGGTCCATCGCAC7900.1472987460961171No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA6460.12044935440264765No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)