FastQCFastQC Report
Wed 8 May 2024
EGAF00007962563

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962563
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences536325
Total Bases16.6 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT38520.7182212278003076No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC15100.28154570456346434No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14460.269612641588589No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA10180.18981028294411037No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA9710.18104693982193631No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8730.1627744371416585No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8500.1584859926350627No Hit
AAACTGTCCTCTGGCTACCGCATCAACCGTG8260.15401109401948446No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7460.13909476530089032No Hit
ATGGTGGTTCAGCACAACCTGACTGCGATGA6030.11243182771640331No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5600.10441430103015895No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5490.10236330583135225No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)