FastQCFastQC Report
Wed 8 May 2024
EGAF00007962565

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962565
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences514286
Total Bases15.9 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG42850.8331939815588992No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT36440.7085551619137989No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC14170.2755276247068752No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13940.2710554049692195No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA10230.1989165561574688No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA8870.17247212640437423No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8430.16391657560190245No Hit
AAACTGTCCTCTGGCTACCGCATCAACCGTG7670.14913880603399665No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7420.14427769762350132No Hit
ATGGTGGTTCAGCACAACCTGACTGCGATGA6000.11666660185188785No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)