FastQCFastQC Report
Wed 8 May 2024
EGAF00007962566

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962566
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences535500
Total Bases23.5 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA17680.33015873015873015No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA16050.29971988795518206No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT15440.28832866479925306No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC11300.21101774042950514No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA9430.1760971055088702No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT8920.16657329598506068No Hit
TTCGCGGGCACGCTGCAGGATCGCGTGCTGTTGGTCCATCGCAC7970.1488328664799253No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA6530.1219421101774043No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)