FastQCFastQC Report
Wed 8 May 2024
EGAF00007962567

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962567
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences535500
Total Bases16.6 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT35760.6677871148459383No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC15630.2918767507002801No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT15420.28795518207282916No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA10260.1915966386554622No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA9970.1861811391223156No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9130.17049486461251168No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9000.16806722689075632No Hit
AAACTGTCCTCTGGCTACCGCATCAACCGTG8320.1553688141923436No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7040.1314659197012138No Hit
ATGGTGGTTCAGCACAACCTGACTGCGATGA5890.1099906629318394No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5650.10550887021475257No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)