FastQCFastQC Report
Wed 8 May 2024
EGAF00007962569

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962569
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences519217
Total Bases16 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG40820.7861838113929244No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT38890.7490124552932589No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT15000.2888965499973999No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC14160.2727183431975455No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA10100.1945236769982493No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA9440.18181222879836367No Hit
AAACTGTCCTCTGGCTACCGCATCAACCGTG8210.1581227116985769No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8010.15427075769861157No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6870.13231461989880916No Hit
ATGGTGGTTCAGCACAACCTGACTGCGATGA6410.12345512569888892No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5470.10535094189905185No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5460.10515834419905358No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)